MCTBI

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Vfold model

Input parameters:

(1) Temperature *

°C

(2) Ion concentrations *

a) Monovalent ion		M
b) Divalent ion	[Mg²⁺]	M

(3) RNA structure *

(up to 1MB, in pdb format)

(4) Job name *

(alphanumeric characters only)

(5) Email address (optional)

(If provided, the results will also be delivered via email)

References for MCTBI:

[1] Sun, LZ, Zhang, JX, Chen, SJ. (2017) MCTBI: a web server for predicting metal ion effects in RNA structures. RNA. 23: 1155-1165.

[2] Sun, L.-Z., Chen, S.-J. (2016) Monte Carlo Tightly Bound Ion Model: Predicting Ion-Binding Properties of RNA with Ion Correlations and Fluctuations. J. Chem. Theory. Comput., 12, 3370-81.

[3] He, Z. J., Chen, S.-J. (2012) Predicting Ion-Nucleic Acid Interactions by Energy Landscape-Guided Sampling. J. Chem. Theory. Comput., 8, 2095-2102.

[4] Tan, Z. J., Chen, S.-J. (2005) Electrostatic correlations and fluctuations for ion binding to a finite length polyelectrolyte. J. Chem. Phys., 122, 44903.